Class HiCSDependence.Par

  • All Implemented Interfaces:
    Parameterizer
    Enclosing class:
    HiCSDependence

    public static class HiCSDependence.Par
    extends java.lang.Object
    implements Parameterizer
    Parameterization class.
    Author:
    Erich Schubert
    • Field Summary

      Fields 
      Modifier and Type Field Description
      private double alpha
      Alpha threshold
      static OptionID ALPHA_ID
      Parameter that determines the size of the test statistic during the Monte-Carlo iteration.
      private int m
      Monte-Carlo iterations
      static OptionID M_ID
      Parameter that specifies the number of iterations in the Monte-Carlo process of identifying high contrast subspaces.
      private RandomFactory rnd
      Random generator.
      static OptionID SEED_ID
      Parameter that specifies the random seed.
      private GoodnessOfFitTest statTest
      Statistical test to use
      static OptionID TEST_ID
      Parameter that specifies which statistical test to use in order to calculate the deviation of two given data samples.
    • Constructor Summary

      Constructors 
      Constructor Description
      Par()  
    • Field Detail

      • M_ID

        public static final OptionID M_ID
        Parameter that specifies the number of iterations in the Monte-Carlo process of identifying high contrast subspaces.
      • ALPHA_ID

        public static final OptionID ALPHA_ID
        Parameter that determines the size of the test statistic during the Monte-Carlo iteration.
      • TEST_ID

        public static final OptionID TEST_ID
        Parameter that specifies which statistical test to use in order to calculate the deviation of two given data samples.
      • SEED_ID

        public static final OptionID SEED_ID
        Parameter that specifies the random seed.
      • m

        private int m
        Monte-Carlo iterations
      • alpha

        private double alpha
        Alpha threshold
    • Constructor Detail

      • Par

        public Par()
    • Method Detail

      • configure

        public void configure​(Parameterization config)
        Description copied from interface: Parameterizer
        Configure the class.

        Note: the status is collected by the parameterization object, so that multiple errors may arise and be reported in one run.

        Specified by:
        configure in interface Parameterizer
        Parameters:
        config - Parameterization
      • make

        public HiCSDependence make()
        Description copied from interface: Parameterizer
        Make an instance after successful configuration.

        Note: your class should return the exact type, only this very broad interface should use Object as return type.

        Specified by:
        make in interface Parameterizer
        Returns:
        a new instance