Deprecated API

Contents

• Methods
• Constructors

Methods

Method	Description
elki.classification.AbstractClassifier.autorun(Database)
elki.clustering.biclustering.AbstractBiclustering.getRowDBID(int)	Expensive!
elki.data.BitVector.getValue(int)
elki.data.ByteVector.getValue(int)
elki.data.FloatVector.getValue(int)
elki.data.IntegerVector.getValue(int)
elki.data.NumberVector.getValue(int)
elki.data.ShortVector.getValue(int)
elki.data.SparseByteVector.doubleValue(int)
elki.data.SparseByteVector.getValue(int)
elki.data.SparseByteVector.longValue(int)
elki.data.SparseDoubleVector.doubleValue(int)
elki.data.SparseDoubleVector.getValue(int)
elki.data.SparseDoubleVector.longValue(int)
elki.data.SparseFloatVector.doubleValue(int)
elki.data.SparseFloatVector.floatValue(int)
elki.data.SparseFloatVector.getValue(int)
elki.data.SparseFloatVector.longValue(int)
elki.data.SparseIntegerVector.doubleValue(int)
elki.data.SparseIntegerVector.getValue(int)
elki.data.SparseIntegerVector.intValue(int)
elki.data.SparseIntegerVector.longValue(int)
elki.data.SparseNumberVector.byteValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterByteValue(int).
elki.data.SparseNumberVector.doubleValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterDoubleValue(int).
elki.data.SparseNumberVector.floatValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterFloatValue(int).
elki.data.SparseNumberVector.intValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterIntValue(int).
elki.data.SparseNumberVector.longValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterLongValue(int).
elki.data.SparseNumberVector.shortValue(int)	As the vectors are sparse, try to iterate over the sparse dimensions only, see SparseNumberVector.iterShortValue(int).
elki.data.SparseShortVector.doubleValue(int)
elki.data.SparseShortVector.getValue(int)
elki.data.SparseShortVector.longValue(int)
elki.data.SparseShortVector.shortValue(int)
elki.database.datastore.DBIDDataStore.get(DBIDRef)	Use DBIDDataStore.assignVar(elki.database.ids.DBIDRef, elki.database.ids.DBIDVar) and a DBIDVar instead, to avoid boxing/unboxing cost.
elki.database.datastore.DoubleDataStore.get(DBIDRef)	Use DoubleDataStore.doubleValue(elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
elki.database.datastore.IntegerDataStore.get(DBIDRef)	Use IntegerDataStore.intValue(elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
elki.database.datastore.memory.ArrayDBIDStore.get(DBIDRef)
elki.database.datastore.memory.ArrayDBIDStore.put(DBIDRef, DBID)
elki.database.datastore.memory.ArrayDoubleStore.get(DBIDRef)
elki.database.datastore.memory.ArrayDoubleStore.put(DBIDRef, Double)
elki.database.datastore.memory.ArrayIntegerStore.get(DBIDRef)
elki.database.datastore.memory.ArrayIntegerStore.put(DBIDRef, Integer)
elki.database.datastore.memory.MapIntegerDBIDDBIDStore.get(DBIDRef)
elki.database.datastore.memory.MapIntegerDBIDDBIDStore.put(DBIDRef, DBID)
elki.database.datastore.memory.MapIntegerDBIDDoubleStore.get(DBIDRef)
elki.database.datastore.memory.MapIntegerDBIDDoubleStore.put(DBIDRef, Double)
elki.database.datastore.memory.MapIntegerDBIDIntegerStore.get(DBIDRef)
elki.database.datastore.memory.MapIntegerDBIDIntegerStore.put(DBIDRef, Integer)
elki.database.datastore.WritableDBIDDataStore.put(DBIDRef, DBID)	Use WritableDBIDDataStore.putDBID(elki.database.ids.DBIDRef, elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
elki.database.datastore.WritableDoubleDataStore.put(DBIDRef, Double)	Use WritableDoubleDataStore.putDouble(elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
elki.database.datastore.WritableIntegerDataStore.put(DBIDRef, Integer)	Use WritableIntegerDataStore.putInt(elki.database.ids.DBIDRef, int) instead, to avoid boxing/unboxing cost.
elki.database.ids.ArrayDBIDs.get(int)	Preferably use a DBIDArrayIter or a DBIDVar instead of materializing expensive DBID objects.
elki.database.ids.DBID.equals(Object)
elki.database.ids.DBIDPair.getFirst()	This method can be expensive. The use of a DBIDVar is recommended when many such accesses are needed.
elki.database.ids.DBIDPair.getSecond()	This method can be expensive. The use of a DBIDVar is recommended when many such accesses are needed.
elki.database.ids.DBIDRef.equals(Object)	Use DBIDUtil.equal(elki.database.ids.DBIDRef, elki.database.ids.DBIDRef) instead.
elki.database.ids.DBIDRef.hashCode()	Do not use this hash code. Some implementations will not offer stable hash codes!
elki.database.ids.integer.IntegerDBID.equals(Object)
elki.database.ids.integer.IntegerDBIDPair.get(int)
elki.database.ids.integer.IntegerDBIDPair.getFirst()
elki.database.ids.integer.IntegerDBIDPair.getSecond()
elki.database.ids.integer.IntegerDBIDVar.get(int)
elki.database.ids.integer.UnmodifiableIntegerArrayDBIDs.get(int)
elki.database.ids.KNNHeap.insert(double, DBIDRef, int)
elki.database.relation.DoubleRelation.get(DBIDRef)	use DoubleRelation.doubleValue(elki.database.ids.DBIDRef) instead.
elki.database.relation.DoubleRelation.insert(DBIDRef, Double)	use DoubleRelation.set(DBIDRef, double) instead.
elki.database.relation.MaterializedDoubleRelation.insert(DBIDRef, Double)
elki.distance.subspace.OnedimensionalDistance.getSelectedDimensions()
elki.distance.subspace.OnedimensionalDistance.setSelectedDimensions(long[])
elki.index.preprocessed.knn.AbstractMaterializeKNNPreprocessor.kNNByObject(DistanceQuery<O>, int, int)	not possible
elki.index.tree.IndexTree.getFile()
elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree.batchNN(N, DBIDs, int)	Change to use by-object NN lookups instead.
elki.itemsetmining.DenseItemset.hashCode()	Itemsets MUST NOT BE USED IN HASH MAPS.
elki.itemsetmining.Itemset.hashCode()	Itemsets MUST NOT BE USED IN HASH MAPS.
elki.itemsetmining.OneItemset.hashCode()	Itemsets MUST NOT BE USED IN HASH MAPS.
elki.itemsetmining.SmallDenseItemset.hashCode()	Itemsets MUST NOT BE USED IN HASH MAPS.
elki.math.linearalgebra.VMath.times(double[], double[][])	this is fairly inefficient memory layout, rewriting your code
elki.math.linearalgebra.VMath.timesTranspose(double[], double[][])	this is fairly inefficient memory layout, rewriting your code
elki.math.statistics.distribution.ExponentiallyModifiedGaussianDistribution.quantile(double)	Not yet implemented!
elki.math.statistics.distribution.InverseGaussianDistribution.quantile(double)	NOT YET IMPLEMENTED.
elki.parallel.variables.SharedDouble.Instance.get()	use SharedDouble.Instance.doubleValue()!
elki.parallel.variables.SharedDouble.Instance.set(Double)	use SharedDouble.Instance.set(double)!
elki.parallel.variables.SharedInteger.Instance.get()	use SharedInteger.Instance.intValue()!
elki.parallel.variables.SharedInteger.Instance.set(Integer)	use SharedInteger.Instance.set(int)!
elki.utilities.datastructures.arraylike.DoubleArrayAdapter.get(double[], int)
elki.utilities.datastructures.arraylike.FloatArrayAdapter.get(float[], int)
elki.utilities.datastructures.arraylike.NumberVectorAdapter.get(NumberVector, int)
elki.utilities.io.ByteArrayUtil.ByteSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.ByteSerializer.getByteSize(Byte)
elki.utilities.io.ByteArrayUtil.ByteSerializer.toByteBuffer(ByteBuffer, Byte)
elki.utilities.io.ByteArrayUtil.DoubleSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.DoubleSerializer.getByteSize(Double)
elki.utilities.io.ByteArrayUtil.DoubleSerializer.toByteBuffer(ByteBuffer, Double)
elki.utilities.io.ByteArrayUtil.FloatSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.FloatSerializer.getByteSize(Float)
elki.utilities.io.ByteArrayUtil.FloatSerializer.toByteBuffer(ByteBuffer, Float)
elki.utilities.io.ByteArrayUtil.IntegerSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.IntegerSerializer.getByteSize(Integer)
elki.utilities.io.ByteArrayUtil.IntegerSerializer.toByteBuffer(ByteBuffer, Integer)
elki.utilities.io.ByteArrayUtil.LongSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.LongSerializer.getByteSize(Long)
elki.utilities.io.ByteArrayUtil.LongSerializer.toByteBuffer(ByteBuffer, Long)
elki.utilities.io.ByteArrayUtil.ShortSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.ShortSerializer.getByteSize(Short)
elki.utilities.io.ByteArrayUtil.ShortSerializer.toByteBuffer(ByteBuffer, Short)
elki.utilities.io.ByteArrayUtil.VarintSerializer.fromByteBuffer(ByteBuffer)
elki.utilities.io.ByteArrayUtil.VarintSerializer.getByteSize(Integer)
elki.utilities.io.ByteArrayUtil.VarintSerializer.toByteBuffer(ByteBuffer, Integer)
elki.visualization.batikutil.JSVGSynchronizedCanvas.setDocument(Document)	Document cannot be synchronized - use JSVGSynchronizedCanvas.setPlot(elki.visualization.svg.SVGPlot) and a SVGPlot object!

Constructors

Constructor	Description
elki.clustering.hierarchical.linkage.CentroidLinkage()	use the static instance CentroidLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.CompleteLinkage()	use the static instance CompleteLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.GroupAverageLinkage()	use the static instance GroupAverageLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.MedianLinkage()	use the static instance MedianLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.MinimumVarianceLinkage()	use the static instance MinimumVarianceLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.SingleLinkage()	use the static instance SingleLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.WardLinkage()	use the static instance WardLinkage.STATIC instead.
elki.clustering.hierarchical.linkage.WeightedAverageLinkage()	use the static instance WeightedAverageLinkage.STATIC instead.
elki.data.Bit(boolean)	Use Bit.valueOf(java.lang.String) to save memory.
elki.distance.ArcCosineDistance()	Use static instance!
elki.distance.ArcCosineUnitlengthDistance()	Use static instance!
elki.distance.BrayCurtisDistance()	Use BrayCurtisDistance.STATIC_CONTINUOUS instance instead.
elki.distance.ClarkDistance()	Use ClarkDistance.STATIC instance instead.
elki.distance.colorhistogram.HistogramIntersectionDistance()	Use static instance
elki.distance.correlation.AbsolutePearsonCorrelationDistance()	Use static instance!
elki.distance.correlation.AbsoluteUncenteredCorrelationDistance()	Use static instance!
elki.distance.correlation.PearsonCorrelationDistance()	Use static instance!
elki.distance.correlation.SquaredPearsonCorrelationDistance()	use static instance!
elki.distance.correlation.SquaredUncenteredCorrelationDistance()	Use static instance!
elki.distance.correlation.UncenteredCorrelationDistance()	Use static instance!
elki.distance.CosineDistance()	Use static instance
elki.distance.CosineUnitlengthDistance()	Use static instance
elki.distance.histogram.HistogramMatchDistance()	Use static instance!
elki.distance.histogram.KolmogorovSmirnovDistance()	Use static instance!
elki.distance.minkowski.EuclideanDistance()	Use static instance!
elki.distance.minkowski.ManhattanDistance()	Use static instance!
elki.distance.minkowski.MaximumDistance()	Use static instance!
elki.distance.minkowski.MinimumDistance()	Use static instance!
elki.distance.minkowski.SparseEuclideanDistance()	Use static instance instead.
elki.distance.minkowski.SparseManhattanDistance()	Use static instance instead.
elki.distance.minkowski.SparseMaximumDistance()	Use static instance
elki.distance.minkowski.SparseSquaredEuclideanDistance()	Use static instance instead.
elki.distance.minkowski.SquaredEuclideanDistance()	Use static instance!
elki.distance.probabilistic.ChiDistance()	Use static instance!
elki.distance.probabilistic.ChiSquaredDistance()	Use static instance!
elki.distance.probabilistic.FisherRaoDistance()
elki.distance.probabilistic.HellingerDistance()
elki.distance.probabilistic.JeffreyDivergenceDistance()	Use static instance!
elki.distance.probabilistic.JensenShannonDivergenceDistance()	Use static instance!
elki.distance.probabilistic.KullbackLeiblerDivergenceAsymmetricDistance()	Use static instance!
elki.distance.probabilistic.KullbackLeiblerDivergenceReverseAsymmetricDistance()	Use static instance!
elki.distance.probabilistic.SqrtJensenShannonDivergenceDistance()	Use static instance!
elki.distance.probabilistic.TriangularDiscriminationDistance()	Use static instance!
elki.distance.probabilistic.TriangularDistance()
elki.distance.SqrtCosineDistance()	Use static instance
elki.distance.SqrtCosineUnitlengthDistance()	Use static instance
elki.distance.strings.LevenshteinDistance()
elki.distance.strings.NormalizedLevenshteinDistance()
elki.index.tree.spatial.kd.PartialEuclideanDistance()
elki.index.tree.spatial.kd.PartialManhattanDistance()
elki.index.tree.spatial.kd.PartialSquaredEuclideanDistance()
elki.similarity.kernel.LinearKernel()
elki.similarity.Kulczynski1Similarity()	Use Kulczynski1Similarity.STATIC instance instead.
elki.similarity.Kulczynski2Similarity()	Use Kulczynski2Similarity.STATIC_CONTINUOUS instance instead.