Package elki.index.tree.spatial.rstarvariants.rstar

Class RStarTreeIndex<O extends NumberVector>

java.lang.Object

elki.index.tree.IndexTree<N,E>

elki.index.tree.spatial.rstarvariants.AbstractRStarTree<N,E,S>

elki.index.tree.spatial.rstarvariants.NonFlatRStarTree<RStarTreeNode,SpatialEntry,RTreeSettings>

elki.index.tree.spatial.rstarvariants.rstar.RStarTree

elki.index.tree.spatial.rstarvariants.rstar.RStarTreeIndex<O>

Type Parameters:

O - Object type

All Implemented Interfaces:

DistancePriorityIndex<O>, DynamicIndex, Index, KNNIndex<O>, RangeIndex<O>

public class RStarTreeIndex<O extends NumberVector>
extends RStarTree
implements DistancePriorityIndex<O>, DynamicIndex

The common use of the rstar tree: indexing number vectors.

Since:

0.4.0

Author:

Erich Schubert

Nested Class Summary

Nested classes/interfaces inherited from class elki.index.tree.spatial.rstarvariants.AbstractRStarTree

AbstractRStarTree.Statistics

Field Summary

Fields

Modifier and Type	Field	Description
private static Logging	LOG	The appropriate logger for this index.
private Relation<O>	relation	Relation

Fields inherited from class elki.index.tree.spatial.rstarvariants.AbstractRStarTree

EXTRA_INTEGRITY_CHECKS, height, settings, statistics

Fields inherited from class elki.index.tree.IndexTree

dirCapacity, dirMinimum, initialized, leafCapacity, leafMinimum

Constructor Summary

Constructors

Constructor	Description
RStarTreeIndex(Relation<O> relation, PageFile<RStarTreeNode> pagefile, RTreeSettings settings)	Constructor.

Method Summary

Modifier and Type	Method	Description
protected SpatialPointLeafEntry	createNewLeafEntry(DBIDRef id)	Create a new leaf entry.
boolean	delete(DBIDRef id)	Deletes the specified object from this index.
void	deleteAll(DBIDs ids)	Deletes the specified objects from this index.
protected Logging	getLogger()	Get the (STATIC) logger for this class.
void	initialize()	Initialize the tree if the page file already existed.
void	insert(DBIDRef id)	Inserts the specified reel vector object into this index.
void	insertAll(DBIDs ids)	Inserts the specified objects into this index.
KNNSearcher<O>	kNNByObject(DistanceQuery<O> distanceQuery, int maxk, int flags)	Get a KNN query object for the given distance query and k.
PrioritySearcher<O>	priorityByObject(DistanceQuery<O> distanceQuery, double maxradius, int flags)	Get a priority search object.
RangeSearcher<O>	rangeByObject(DistanceQuery<O> distanceQuery, double maxradius, int flags)	Get a range query object for the given distance query and k.

Methods inherited from class elki.index.tree.spatial.rstarvariants.rstar.RStarTree

createNewDirectoryEntry, createNewDirectoryNode, createNewLeafNode, createRootEntry

Methods inherited from class elki.index.tree.spatial.rstarvariants.NonFlatRStarTree

bulkLoad, computeHeight, createEmptyRoot, hasOverflow, hasUnderflow

Methods inherited from class elki.index.tree.spatial.rstarvariants.AbstractRStarTree

adjustTree, canBulkLoad, choosePath, containedTest, createBulkLeafNodes, createNewRoot, deletePath, doExtraIntegrityChecks, findPathToObject, getHeight, getLeaves, initializeCapacities, initializeFromFile, insertEntry, insertLeaf, logStatistics, reInsert, setHeight, toString

Methods inherited from class elki.index.tree.IndexTree

createHeader, deleteNode, getFile, getNode, getNode, getPageID, getPageSize, getRootEntry, getRootID, getRootPath, initialize, isRoot, postDelete, preInsert, writeNode

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface elki.index.DistancePriorityIndex

priorityByDBID

Methods inherited from interface elki.index.Index

logStatistics

Methods inherited from interface elki.index.KNNIndex

kNNByDBID

Methods inherited from interface elki.index.RangeIndex

rangeByDBID

Field Detail

LOG

private static final Logging LOG

The appropriate logger for this index.

relation

private Relation<O extends NumberVector> relation

Relation

Constructor Detail

RStarTreeIndex

public RStarTreeIndex(Relation<O> relation,
                      PageFile<RStarTreeNode> pagefile,
                      RTreeSettings settings)

Constructor.

Parameters:

relation - Relation to index

pagefile - Page file

settings - Tree settings

Method Detail

createNewLeafEntry

protected SpatialPointLeafEntry createNewLeafEntry(DBIDRef id)

Create a new leaf entry.

Parameters:

id - Object id

Returns:

Spatial leaf entry

initialize

public void initialize()

Description copied from class: IndexTree

Initialize the tree if the page file already existed.

Specified by:

initialize in interface Index

Overrides:

initialize in class IndexTree<RStarTreeNode,SpatialEntry>

insert

public void insert(DBIDRef id)

Inserts the specified reel vector object into this index.

Specified by:

insert in interface DynamicIndex

Parameters:

id - the object id that was inserted

insertAll

public void insertAll(DBIDs ids)

Inserts the specified objects into this index. If a bulk load mode is implemented, the objects are inserted in one bulk.

Specified by:

insertAll in interface DynamicIndex

Parameters:

ids - the objects to be inserted

delete

public boolean delete(DBIDRef id)

Deletes the specified object from this index.

Specified by:

delete in interface DynamicIndex

Parameters:

id - Object to remove

Returns:

true if this index did contain the object with the specified id, false otherwise

deleteAll

public void deleteAll(DBIDs ids)

Description copied from interface: DynamicIndex

Deletes the specified objects from this index.

Specified by:

deleteAll in interface DynamicIndex

Parameters:

ids - Objects to remove

kNNByObject

public KNNSearcher<O> kNNByObject(DistanceQuery<O> distanceQuery,
                                  int maxk,
                                  int flags)

Description copied from interface: KNNIndex

Get a KNN query object for the given distance query and k.

This function MAY return null, when the given distance is not supported!

Specified by:

kNNByObject in interface DistancePriorityIndex<O extends NumberVector>

Specified by:

kNNByObject in interface KNNIndex<O extends NumberVector>

Parameters:

distanceQuery - Distance query

maxk - Maximum value of k

flags - Hints for the optimizer

Returns:

KNN Query object or null

rangeByObject

public RangeSearcher<O> rangeByObject(DistanceQuery<O> distanceQuery,
                                      double maxradius,
                                      int flags)

Description copied from interface: RangeIndex

Get a range query object for the given distance query and k.

This function MAY return null, when the given distance is not supported!

Specified by:

rangeByObject in interface DistancePriorityIndex<O extends NumberVector>

Specified by:

rangeByObject in interface RangeIndex<O extends NumberVector>

Parameters:

distanceQuery - Distance query

maxradius - Maximum range

flags - Hints for the optimizer

Returns:

KNN Query object or null

priorityByObject

public PrioritySearcher<O> priorityByObject(DistanceQuery<O> distanceQuery,
                                            double maxradius,
                                            int flags)

Description copied from interface: DistancePriorityIndex

Get a priority search object.

Specified by:

priorityByObject in interface DistancePriorityIndex<O extends NumberVector>

Parameters:

distanceQuery - Distance query

maxradius - Maximum search range (may be Double.POSITIVE_INFINITY

flags - Optimizer hints

Returns:

Priority searcher

getLogger

protected Logging getLogger()

Description copied from class: IndexTree

Get the (STATIC) logger for this class.

Overrides:

getLogger in class RStarTree

Returns:

the static logger